CCPROMISE
This is the released version of CCPROMISE; for the devel version, see CCPROMISE.
PROMISE analysis with Canonical Correlation for Two Forms of High Dimensional Genetic Data
Bioconductor version: Release (3.23)
Perform Canonical correlation between two forms of high demensional genetic data, and associate the first compoent of each form of data with a specific biologically interesting pattern of associations with multiple endpoints. A probe level analysis is also implemented.
Author: Xueyuan Cao <xueyuan.cao at stjude.org> and Stanley.pounds <stanley.pounds at stjude.org>
Maintainer: Xueyuan Cao <xueyuan.cao at stjude.org>
citation("CCPROMISE")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CCPROMISE")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CCPROMISE")| An introduction to CCPROMISE | R Script | |
| Reference Manual |
Details
| biocViews | GeneExpression, Microarray, Software |
| Version | 1.38.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (10 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.3.0), stats, methods, CCP, PROMISE, Biobase, GSEABase, utils |
| Imports | |
| System Requirements | |
| URL |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CCPROMISE_1.38.0.tar.gz |
| Windows Binary (x86_64) | CCPROMISE_1.38.0.zip |
| macOS Binary (big-sur-x86_64) | CCPROMISE_1.38.0.tgz |
| macOS Binary (sonoma-arm64) | CCPROMISE_1.38.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CCPROMISE |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CCPROMISE |
| Bioc Package Browser | https://code.bioconductor.org/browse/CCPROMISE/ |
| Package Short Url | https://bioconductor.org/packages/CCPROMISE/ |
| Package Downloads Report | Download Stats |