AnVILVRS
This is the development version of AnVILVRS; to use it, please install the devel version of Bioconductor.
Expose the vrs_anvil_toolkit Python package via R
Bioconductor version: Development (3.24)
Process Variant Call Format (VCF) files and perform lookup operations on Genomic Variation Representation Service (GA4GH VRS) identifiers. The GA4GH VRS identifiers provide a standardized way to represent genomic variations, making it easier to exchange and share genomic information.
Author: Marcel Ramos [aut, cre]
Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>
citation("AnVILVRS")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("AnVILVRS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AnVILVRS")| AnVILVRS Introduction | HTML | R Script |
| Reference Manual |
Details
| biocViews | BiologicalQuestion, Infrastructure, Software, ThirdPartyClient, VariantAnnotation |
| Version | 0.99.19 |
| In Bioconductor since | BioC 3.24 (R-4.6) |
| License | Artistic-2.0 |
| Depends | R (>= 4.5.0) |
| Imports | AnVILGCP, BiocBaseUtils, BiocFileCache, reticulate |
| System Requirements | |
| URL | https://github.com/Bioconductor/AnVILVRS |
| Bug Reports | https://github.com/Bioconductor/AnVILVRS/issues |
See More
| Suggests | AnVILBase, BiocStyle, gert, knitr, readr, rmarkdown, tinytest |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | AnVILVRS_0.99.19.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (big-sur-arm64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/AnVILVRS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AnVILVRS |
| Bioc Package Browser | https://code.bioconductor.org/browse/AnVILVRS/ |
| Package Short Url | https://bioconductor.org/packages/AnVILVRS/ |
| Package Downloads Report | Download Stats |