AWAggregatorData
This is the development version of AWAggregatorData; to use it, please install the devel version of Bioconductor.
Attribute-Weighted Aggregation Data
Bioconductor version: Development (3.22)
The AWAggregatorData package contains the data associated with the AWAggregator R package. It includes two pre-trained random forest models, one incorporating the average coefficient of variation as a feature, and the other one not including it. It also contains the PSMs in Benchmark Set 1~3 derived from the psm.tsv output files generated by FragPipe, which are used to train the random forest models.
Author: Jiahua Tan [aut, cre]
, Gian L. Negri [aut]
, Gregg B. Morin [aut]
, David D. Y. Chen [aut]
Maintainer: Jiahua Tan <jiahuatan at chem.ubc.ca>
citation("AWAggregatorData")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("AWAggregatorData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AWAggregatorData")| AWAggregatorData vignette | HTML | R Script |
| Reference Manual |
Details
| biocViews | ExperimentData, ExperimentHub, MassSpectrometryData, PackageTypeData, Proteome |
| Version | 0.99.4 |
| License | MIT + file LICENSE |
| Depends | ExperimentHub |
| Imports | |
| System Requirements | |
| URL | https://github.com/Tan-Jiahua/AWAggregatorData |
| Bug Reports | https://github.com/Tan-Jiahua/AWAggregatorData/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | AWAggregatorData_0.99.4.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/AWAggregatorData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AWAggregatorData |
| Package Short Url | https://bioconductor.org/packages/AWAggregatorData/ |
| Package Downloads Report | Download Stats |