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Recent Commits

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Newest Packages

Software Packages

Rega	R Interface to European Genome-Phenome Archive
parati	Parental Allele Transmission Inference for Trio Genotype Data
scTypeEval	Evaluation of cell type classifications in single-cell transcriptomics
RankMap	Rank-based reference mapping for fast and robust cell type annotation in spatial and single-cell transcriptomics
betterChromVAR	Improved ChromVAR (Chromatin Variation Across Regions)
LRDE	Differential Expression Analysis with Long Read RNA-Seq Data
scLang	A unified language for interacting with Seurat and SingleCellExperiment
GSABenchmark	Tools for benchmarking single-cell gene set analysis methods
SpliceImpactR	An R package to identify functional impacts due to alternative RNA processing events
hammers	Utilities for scRNA-seq data analysis

Experiment Data Packages

HumanRetinaLRSData	.
DMRsegaldata	Example DNAm Data for DMRsegal
curatedCRCData	.
EMTscoreData	Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)
MutSeqRData	Experimental Data for MutSeqR Examples
dominatRData	Datasets for R Package dominatR
DoReMiTra	Orchestrating Blood Radiation Transcriptomic Data
nmrdata	Example 1d NMR Data for Metabolic Profiling
ChIPDBData	ChIP-seq Target Databases for TFEA.ChIP
iModMixData	Data for iModMix Package

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Single Package Builder

All Current Submissions

Recent Submissions

myorgdbb

CycleMix

GSEAlens

pgen2gds

Fancy

friends.test

Fishash

karioCaS

ProteinBatcher for proteomics downstream analysis

ctdR

scFastDE

growkar

microscapeR: Downstream Analysis Tools for Amplicon Sequencing Data

exposomeSC

SpatialDataR

WithinHostExperiment

scBatchQC

mirBottleneck

barmixR

spectreasy

Recent Builds

PlinkMatrix	2026-04-15T17:17:36
BatChef	2026-04-15T15:08:09
PlinkMatrix	2026-04-15T13:00:19
wavFeatExt	2026-04-15T05:30:49
wavFeatExt	2026-04-15T03:56:30
wavFeatExt	2026-04-15T03:33:23
dnaEPICO	2026-04-14T22:17:29
sigvar	2026-04-14T22:10:13
sigvar	2026-04-14T21:41:56
HistoImagePlot	2026-04-14T20:50:01
imageTCGAutils	2026-04-14T20:37:57
imageFeatureTCGA	2026-04-14T20:09:37
imageFeatureTCGA	2026-04-14T19:18:05
imageFeatureTCGA	2026-04-14T18:57:42
imageTCGAutils	2026-04-14T18:41:57
imageFeatureTCGA	2026-04-14T18:37:21
HistoImagePlot	2026-04-14T15:56:21
CrcBiomeScreen	2026-04-14T14:00:49
dnaEPICO	2026-04-14T09:25:20
atacInferCnv	2026-04-14T07:12:48

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Mirror Status

Last updated 2026-04-15T05:04:39-04:00. (Will be updated every 24 hours).

To use a Bioconductor mirror use the R function `chooseBioCmirror()`

URL	Mirror	Release	Devel
https://bioconductor.org/	yes	yes	yes
https://bioconductor.posit.co/	yes	yes	yes
https://bioconductor.statistik.tu-dortmund.de/	yes	yes	yes
https://ftp.gwdg.de/pub/misc/bioconductor/	yes	yes	yes
https://bioconductor.riken.jp/	yes	yes	yes
https://free.nchc.org.tw/bioconductor/	yes	no	no
https://mirrors.tuna.tsinghua.edu.cn/bioconductor/	yes	yes	yes
https://mirrors.nju.edu.cn/bioconductor/	yes	yes	yes
https://mirrors.ustc.edu.cn/bioc/	yes	yes	yes
https://mirrors.westlake.edu.cn/bioconductor	yes	yes	no
https://mirrors.zju.edu.cn/bioconductor	yes	yes	yes
https://bioconductor.uib.no/	yes	yes	no
https://bioconductor.unipi.it	no	no	no
https://cran.asia	yes	yes	yes
https://mirror.aarnet.edu.au/pub/bioconductor	yes	no	no
https://mirrors.dotsrc.org/bioconductor/	yes	yes	yes
https://mirror.accum.se/mirror/bioconductor.org/	yes	yes	yes

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