tissueTreg

This is the released version of tissueTreg; for the devel version, see tissueTreg.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

TWGBS and RNA-seq data from tissue T regulatory cells from mice

Bioconductor version: Release (3.23)

The package provides ready to use epigenomes (obtained from TWGBS) and transcriptomes (RNA-seq) from various tissues as obtained in the study (Delacher and Imbusch 2017, PMID: 28783152). Regulatory T cells (Treg cells) perform two distinct functions: they maintain self-tolerance, and they support organ homeostasis by differentiating into specialized tissue Treg cells. The underlying dataset characterises the epigenetic and transcriptomic modifications for specialized tissue Treg cells.

Author: Charles Imbusch [aut, cre], Michael Delacher [aut], Markus Feuerer [aut], Benedikt Brors [aut]

Maintainer: Charles Imbusch <c.imbusch at dkfz.de>

Citation (from within R, enter citation("tissueTreg")):

Charles Imbusch, Michael Delacher, Markus Feuerer, Benedikt Brors. tissueTreg: TWGBS and RNA-seq data from tissue T regulatory cells from mice. doi:10.18129/B9.bioc.tissueTreg, R package version 1.32.0, https://bioconductor.org/packages/tissueTreg.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tissueTreg")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tissueTreg")

tissueTreg	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, Mus_musculus_Data, RNASeqData, SequencingData, Tissue
Version	1.32.0
In Bioconductor since	BioC 3.7 (R-3.5) (8.5 years)
License	GPL (>= 2)
Depends	R (>= 3.5)
Imports
System Requirements
URL	https://github.com/cimbusch/tissueTreg

Suggests	BiocStyle, knitr, rmarkdown, testthat, ExperimentHub, bsseq, SummarizedExperiment, ggplot2, reshape2
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	DMRcate
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tissueTreg_1.32.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/tissueTreg
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tissueTreg
Package Short Url	https://bioconductor.org/packages/tissueTreg/
Package Downloads Report	Download Stats