tRNAscanImport
This is the released version of tRNAscanImport; for the devel version, see tRNAscanImport.
All Bioconductor versions of tRNAscanImport
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7
Importing a tRNAscan-SE result file as GRanges object
Bioconductor version: 3.23 · Package version: 1.32.0
The package imports the result of tRNAscan-SE as a GRanges object.
Author: Felix G.M. Ernst [aut, cre] 
Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>
Citation
From within R, enter citation("tRNAscanImport"):
Felix G.M. Ernst. tRNAscanImport: Importing a tRNAscan-SE result file as GRanges object. doi:10.18129/B9.bioc.tRNAscanImport, R package version 1.32.0, https://bioconductor.org/packages/tRNAscanImport.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tRNAscanImport")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.32.0 |
| License | GPL-3 + file LICENSE |
| URL | https://github.com/FelixErnst/tRNAscanImport |
| Bug Reports | https://github.com/FelixErnst/tRNAscanImport/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.7 (R-3.5) (8 years) |
| Downloads rank | 1119 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, Preprocessing, Software, Visualization, WorkflowStep |
| Package Short Url | https://bioconductor.org/packages/tRNAscanImport/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tRNAscanImport")| Importing tRNAscan-SE output as GRanges | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | tRNAscanImport_1.32.0.tar.gz |
| Windows binary (x86_64) | tRNAscanImport_1.32.0.zip |
| macOS binary (arm64) | tRNAscanImport_1.32.0.tgz |
| macOS binary (x86_64) | tRNAscanImport_1.32.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/tRNAscanImport |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tRNAscanImport |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.5), GenomicRanges, tRNA
Imports: methods, stringr, BiocGenerics, Biostrings, Structstrings, S4Vectors, IRanges, XVector, Seqinfo, rtracklayer, BSgenome, Rsamtools
Suggests: BiocStyle, knitr, rmarkdown, testthat, ggplot2, BSgenome.Scerevisiae.UCSC.sacCer3
Reverse dependencies
Suggests Me (2): Structstrings, tRNA