splots
This is the released version of splots; for the devel version, see splots.
Visualization of high-throughput assays in microtitre plate or slide format
Bioconductor version: Release (3.23)
This package is here to support legacy usages of it, but it should not be used for new code development. It provides a single function, plotScreen, for visualising data in microtitre plate or slide format. As a better alternative for such functionality, please consider the platetools package on CRAN (https://cran.r-project.org/package=platetools and https://github.com/Swarchal/platetools), or ggplot2 (geom_raster, facet_wrap) as exemplified in the vignette of this package.
Author: Wolfgang Huber, Oleg Sklyar
Maintainer: Wolfgang Huber <wolfgang.huber at embl.org>
citation("splots")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("splots")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("splots")| splots: visualization of data from assays in microtitre plate or slide format | HTML | R Script |
| Reference Manual |
Details
| biocViews | MicrotitrePlateAssay, Sequencing, Software, Visualization |
| Version | 1.78.0 |
| In Bioconductor since | BioC 1.9 (R-2.4) (20 years) |
| License | LGPL |
| Depends | |
| Imports | grid, RColorBrewer |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown, assertthat, HD2013SGI, dplyr, ggplot2 |
| Linking To | |
| Enhances | |
| Depends On Me | HD2013SGI |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | splots_1.78.0.tar.gz |
| Windows Binary (x86_64) | splots_1.78.0.zip |
| macOS Binary (big-sur-x86_64) | splots_1.78.0.tgz |
| macOS Binary (sonoma-arm64) | splots_1.78.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/splots |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/splots |
| Bioc Package Browser | https://code.bioconductor.org/browse/splots/ |
| Package Short Url | https://bioconductor.org/packages/splots/ |
| Package Downloads Report | Download Stats |