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seqCAT

This is the released version of seqCAT; for the devel version, see seqCAT.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6

High Throughput Sequencing Cell Authentication Toolkit

DOI: 10.18129/B9.bioc.seqCAT

Bioconductor version: Release (3.23)

The seqCAT package uses variant calling data (in the form of VCF files) from high throughput sequencing technologies to authenticate and validate the source, function and characteristics of biological samples used in scientific endeavours.

Author: Erik Fasterius [aut, cre]

Maintainer: Erik Fasterius <erik.fasterius at outlook.com>

Citation (from within R, enter citation("seqCAT")):

Erik Fasterius. seqCAT: High Throughput Sequencing Cell Authentication Toolkit. doi:10.18129/B9.bioc.seqCAT, R package version 1.34.0, https://bioconductor.org/packages/seqCAT.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("seqCAT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqCAT")

Details

Package Archives

Follow Installation instructions to use this package in your R session.