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scmeth

This is the released version of scmeth; for the devel version, see scmeth.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

Functions to conduct quality control analysis in methylation data

DOI: 10.18129/B9.bioc.scmeth

Bioconductor version: Release (3.23)

Functions to analyze methylation data can be found here. Some functions are relevant for single cell methylation data but most other functions can be used for any methylation data. Highlight of this workflow is the comprehensive quality control report.

Author: Divy Kangeyan <divyswar01 at g.harvard.edu>

Maintainer: Divy Kangeyan <divyswar01 at g.harvard.edu>

Citation (from within R, enter citation("scmeth")):

Divy Kangeyan. scmeth: Functions to conduct quality control analysis in methylation data. doi:10.18129/B9.bioc.scmeth, R package version 1.32.0, https://bioconductor.org/packages/scmeth.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scmeth")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scmeth")

Details

Package Archives

Follow Installation instructions to use this package in your R session.