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schex

This is the released version of schex; for the devel version, see schex.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10

Hexbin plots for single cell omics data


Bioconductor version: Release (3.23)

Builds hexbin plots for variables and dimension reduction stored in single cell omics data such as SingleCellExperiment. The ideas used in this package are based on the excellent work of Dan Carr, Nicholas Lewin-Koh, Martin Maechler and Thomas Lumley.

Author: Saskia Freytag [aut, cre], Wancheng Tang [ctb], Zimo Peng [ctb], Jingxiu Huang [ctb]

Maintainer: Saskia Freytag <freytag.s at wehi.edu.au>

Citation (from within R, enter citation("schex")):

Saskia Freytag. schex: Hexbin plots for single cell omics data. doi:10.18129/B9.bioc.schex, R package version 1.26.0, https://bioconductor.org/packages/schex.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("schex")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("schex")
Seurat_to_SCE HTML R Script
using_schex HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews DataImport, DimensionReduction, ImmunoOncology, Sequencing, SingleCell, Software, Visualization
Version1.26.0
In Bioconductor sinceBioC 3.10 (R-3.6) (7 years)
License GPL-3
Depends SingleCellExperiment (>= 1.7.4), ggplot2 (>= 3.2.1)
Imports hexbin, stats, methods, cluster, dplyr, entropy, ggforce, grid, rlang, concaveman
System Requirements
URLhttps://github.com/SaskiaFreytag/schex
Bug Reportshttps://github.com/SaskiaFreytag/schex/issues
See More
Suggests ggrepel, knitr, rmarkdown, testthat (>= 2.1.0), covr, TENxPBMCData, scater, Seurat, shinydashboard, iSEE, igraph, scran, tibble, scuttle
Linking To
Enhances
Depends On Me
Imports Me scTensor, scTGIF
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package schex_1.26.0.tar.gz
Windows Binary (x86_64) schex_1.26.0.zip
macOS Binary (big-sur-x86_64) schex_1.26.0.tgz
macOS Binary (sonoma-arm64) schex_1.26.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/schex
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/schex
Package Short Url https://bioconductor.org/packages/schex/
Package Downloads ReportDownload Stats