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ptairData

PTR-TOF-MS volatolomics raw datasets from exhaled air and cell culture headspace


Bioconductor version: Release (3.18)

The package ptairData contains two raw datasets from Proton-Transfer-Reaction Time-of-Flight mass spectrometer acquisitions (PTR-TOF-MS), in the HDF5 format. One from the exhaled air of two volunteer healthy individuals with three replicates, and one from the cell culture headspace from two mycobacteria species and one control (culture medium only) with two replicates. Those datasets are used in the examples and in the vignette of the ptairMS package (PTR-TOF-MS data pre-processing). There are also used to gererate the ptrSet in the ptairMS data : exhaledPtrset and mycobacteriaSet

Author: camille Roquencourt [aut, cre]

Maintainer: camille Roquencourt <camille.roquencourt at hotmail.fr>

Citation (from within R, enter citation("ptairData")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ptairData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ptairData")
PTR-TOF-MS dataset HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellCulture, ExperimentData, MassSpectrometryData
Version 1.10.0
License GPL-3
Depends
Imports rhdf5, signal, stats, graphics
System Requirements
URL
Bug Reports https://github.com/camilleroquencourt/ptairData/issues
See More
Suggests knitr, rmarkdown, testthat, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me ptairMS
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ptairData_1.10.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/ptairData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ptairData
Package Short Url https://bioconductor.org/packages/ptairData/
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