nanotubes
Mouse nanotube CAGE data
Bioconductor version: 3.23 · Package version: 1.28.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Cap Analysis of Gene Expression (CAGE) data from "Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure in Vivo" by Bornholdt et al. supplied as CAGE Transcription Start Sites (CTSSs).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("nanotubes")Details
| Maintainer | Malte Thodberg <maltethodberg@gmail.com> |
| Author | Malte Thodberg |
| License | GPL-3 |
| URL | https://github.com/MalteThodberg/nanotubes |
| Bug Reports | https://github.com/MalteThodberg/nanotubes/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ExperimentData, ExpressionData, SequencingData |
| Package Short Url | https://bioconductor.org/packages/nanotubes/ |
Citation
From within R, enter citation("nanotubes"):
Malte Thodberg. nanotubes: Mouse nanotube CAGE data. doi:10.18129/B9.bioc.nanotubes, R package version 1.28.0, https://bioconductor.org/packages/nanotubes.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | nanotubes_1.28.0.tar.gz |
Dependencies
Depends: R (>= 3.6)
Suggests: knitr, rmarkdown, BiocStyle, GenomicRanges, rtracklayer, CAGEfightR
Reverse dependencies
Depends On Me (1): CAGEWorkflow