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Mouse nanotube CAGE data

Bioconductor version: Release (3.18)

Cap Analysis of Gene Expression (CAGE) data from "Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure in Vivo" by Bornholdt et al. supplied as CAGE Transcription Start Sites (CTSSs).

Author: Malte Thodberg

Maintainer: Malte Thodberg <maltethodberg at gmail.com>

Citation (from within R, enter citation("nanotubes")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

nanotubes HTML R Script
Reference Manual PDF


biocViews ExperimentData, ExpressionData, SequencingData
Version 1.18.0
License GPL-3
Depends R (>= 3.6)
System Requirements
URL https://github.com/MalteThodberg/nanotubes
Bug Reports https://github.com/MalteThodberg/nanotubes/issues
See More
Suggests knitr, rmarkdown, BiocStyle, GenomicRanges, rtracklayer, CAGEfightR
Linking To
Depends On Me CAGEWorkflow
Imports Me
Suggests Me
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package nanotubes_1.18.0.tar.gz
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Source Repository git clone https://git.bioconductor.org/packages/nanotubes
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/nanotubes
Package Short Url https://bioconductor.org/packages/nanotubes/
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