macrophage

DOI: 10.18129/B9.bioc.macrophage    

Human macrophage immune response

Bioconductor version: Release (3.9)

This package provides the output of running Salmon on a set of 24 RNA-seq samples from Alasoo, et al. "Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response", published in Nature Genetics, January 2018. For details on version numbers and how the samples were processed see the package vignette.

Author: Michael Love

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("macrophage")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("macrophage")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("macrophage")

 

HTML R Script Salmon quantifications for human macrophage immune response experiment
PDF   Reference Manual

Details

biocViews ExperimentData, RNASeqData, SequencingData
Version 1.0.0
License GPL (>= 2)
Depends
Imports
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me fishpond
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package macrophage_1.0.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/macrophage
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/macrophage
Package Short Url http://bioconductor.org/packages/macrophage/
Package Downloads Report Download Stats

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