Welcome to the new bioconductor.org!

lumiBarnes

Barnes Benchmark Illumina Tissues Titration Data


Bioconductor version: Release (3.18)

The Barnes benchmark dataset can be used to evaluate the algorithms for Illumina microarrays. It measured a titration series of two human tissues, blood and placenta, and includes six samples with the titration ratio of blood and placenta as 100:0, 95:5, 75:25, 50:50, 25:75 and 0:100. The samples were hybridized on HumanRef-8 BeadChip (Illumina, Inc) in duplicate. The data is loaded as an LumiBatch Object (see documents in the lumi package).

Author: Pan Du

Maintainer: Pan Du <dupan at northwestern.edu>

Citation (from within R, enter citation("lumiBarnes")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("lumiBarnes")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews ChipOnChipData, ExperimentData, MicroarrayData, Tissue
Version 1.42.0
License LGPL
Depends R (>= 2.0), Biobase(>= 2.5.5), lumi(>= 1.1.0)
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me arrayMvout, lumi
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package lumiBarnes_1.42.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/lumiBarnes
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/lumiBarnes
Package Short Url https://bioconductor.org/packages/lumiBarnes/
Package Downloads Report Download Stats