fourDNData
4DN data package
Bioconductor version: 3.23 · Package version: 1.12.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
fourDNData is a data package giving programmatic access to Hi-C contact matrices uniformly processed by the [4DN consortium](https://www.4dnucleome.org/). The matrices are available in the multi-resolution `.mcool` format.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("fourDNData")Details
| Maintainer | Jacques Serizay <jacquesserizay@gmail.com> |
| Author | Jacques Serizay [aut, cre] |
| License | MIT + file LICENSE |
| URL | https://github.com/js2264/fourDNData |
| Bug Reports | https://github.com/js2264/fourDNData/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ExperimentData, SequencingData |
| Package Short Url | https://bioconductor.org/packages/fourDNData/ |
Citation
From within R, enter citation("fourDNData"):
Jacques Serizay. fourDNData: 4DN data package. doi:10.18129/B9.bioc.fourDNData, R package version 1.12.0, https://bioconductor.org/packages/fourDNData.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | fourDNData_1.12.0.tar.gz |
Dependencies
Depends: R (>= 4.2)
Imports: BiocFileCache, HiCExperiment, GenomicRanges, IRanges, S4Vectors, utils, tools
Suggests: rtracklayer, dplyr, testthat, methods, BiocStyle, knitr, rmarkdown