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curatedAdipoRNA

A Curated RNA-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

Bioconductor version: 3.23 · Package version: 1.28.0

Other Bioconductor versions

devel is the development version; release is the current stable one.

3.24 (devel), 3.23 (release)

A curated dataset of RNA-Seq samples. The samples are MDI-induced pre-phagocytes (3T3-L1) at different time points/stage of differentiation. The package document the data collection, pre-processing and processing. In addition to the documentation, the package contains the scripts that was used to generated the data.

DOI: 10.18129/B9.bioc.curatedAdipoRNA

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("curatedAdipoRNA")

Details

MaintainerMahmoud Ahmed <mahmoud.s.fahmy@students.kasralainy.edu.eg>
AuthorMahmoud Ahmed [aut, cre] (ORCID: <https://orcid.org/0000-0002-4377-6541>)
LicenseGPL-3
URLhttps://github.com/MahShaaban/curatedAdipoRNA
Bug Reportshttps://github.com/MahShaaban/curatedAdipoRNA/issues
Source branchRELEASE_3_23
Build report Bioconductor build system, r-universe
biocViewsExperimentData, GEO, RNASeqData, SequencingData
Package Short Url https://bioconductor.org/packages/curatedAdipoRNA/

Citation

From within R, enter citation("curatedAdipoRNA"):

Mahmoud Ahmed. curatedAdipoRNA: A Curated RNA-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1). doi:10.18129/B9.bioc.curatedAdipoRNA, R package version 1.28.0, https://bioconductor.org/packages/curatedAdipoRNA.

Generated from the package metadata; it may differ from the package's own citation.

Download

Follow the installation instructions to use this package in your R session.

Source packagecuratedAdipoRNA_1.28.0.tar.gz
Dependencies

Depends: R (>= 3.6), SummarizedExperiment

Suggests: knitr, rmarkdown, DESeq2, fastqcr, devtools, testthat, readr, dplyr, tidyr, ggplot2, S4Vectors