RcisTarget.hg19.motifDBs.cisbpOnly.500bp
RcisTarget motif databases for human (hg19) - Subset of 4.6k motifs
Bioconductor version: 3.23 · Package version: 1.32.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
RcisTarget databases: Gene-based motif rankings and annotation to transcription factors. This package contains a subset of 4.6k motifs (cisbp motifs), scored only within 500bp upstream and the TSS. See RcisTarget tutorial to download the full databases, containing 20k motifs and search space up to 10kbp around the TSS.
DOI: 10.18129/B9.bioc.RcisTarget.hg19.motifDBs.cisbpOnly.500bp
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RcisTarget.hg19.motifDBs.cisbpOnly.500bp")Details
| Maintainer | Sara Aibar <sara.aibar@kuleuven.vib.be> |
| Author | Sara Aibar, Gert Hulselmans, Stein Aerts. Laboratory of Computational Biology, KU Leuven Center for Human Genetics. Leuven, Belgium. |
| License | GPL-3 |
| URL | http://scenic.aertslab.org |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ExperimentData, Homo_sapiens_Data |
| Package Short Url | https://bioconductor.org/packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp/ |
Citation
From within R, enter citation("RcisTarget.hg19.motifDBs.cisbpOnly.500bp"):
Sara Aibar, Gert Hulselmans, Stein Aerts. Laboratory of Computational Biology, KU Leuven Center for Human Genetics. Leuven, Belgium. RcisTarget.hg19.motifDBs.cisbpOnly.500bp: RcisTarget motif databases for human (hg19) - Subset of 4.6k motifs. doi:10.18129/B9.bioc.RcisTarget.hg19.motifDBs.cisbpOnly.500bp, R package version 1.32.0, https://bioconductor.org/packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | RcisTarget.hg19.motifDBs.cisbpOnly.500bp_1.32.0.tar.gz |
Reverse dependencies
Suggests Me (1): RcisTarget