NGScopyData
Subset of BAM files of human tumor and pooled normal sequencing data (Zhao et al. 2014) for the NGScopy package
Bioconductor version: 3.23 · Package version: 1.32.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Subset of BAM files of human lung tumor and pooled normal samples by targeted panel sequencing. [Zhao et al 2014. Targeted Sequencing in Non-Small Cell Lung Cancer (NSCLC) Using the University of North Carolina (UNC) Sequencing Assay Captures Most Previously Described Genetic Aberrations in NSCLC. In preparation.] Each sample is a 10 percent random subsample drawn from the original sequencing data. The pooled normal sample has been rescaled accroding to the total number of normal samples in the "pool". Here provided is the subsampled data on chr6 (hg19).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("NGScopyData")Details
| Maintainer | Xiaobei Zhao <xiaobei@binf.ku.dk> |
| Author | Xiaobei Zhao [aut, cre, cph] |
| License | GPL (>=2) |
| URL | http://www.bioconductor.org/packages/release/data/experiment/html/NGScopyData.html |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | CancerData, ExperimentData, LungCancerData, SequencingData |
| Package Short Url | https://bioconductor.org/packages/NGScopyData/ |
Citation
From within R, enter citation("NGScopyData"):
Xiaobei Zhao. NGScopyData: Subset of BAM files of human tumor and pooled normal sequencing data (Zhao et al. 2014) for the NGScopy package. doi:10.18129/B9.bioc.NGScopyData, R package version 1.32.0, https://bioconductor.org/packages/NGScopyData.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | NGScopyData_1.32.0.tar.gz |