LungCancerLines
Reads from Two Lung Cancer Cell Lines
Bioconductor version: 3.23 · Package version: 0.50.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Reads from an RNA-seq experiment between two lung cancer cell lines: H1993 (met) and H2073 (primary). The reads are stored as Fastq files and are meant for use with the TP53Genome object in the gmapR package.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("LungCancerLines")Details
| Maintainer | Michael Lawrence <michafla@gene.com> |
| Author | Cory Barr, Michael Lawrence |
| License | Artistic-2.0 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | CancerData, ExperimentData, Genome, LungCancerData, RNASeqData |
| Package Short Url | https://bioconductor.org/packages/LungCancerLines/ |
Citation
From within R, enter citation("LungCancerLines"):
Cory Barr, Michael Lawrence. LungCancerLines: Reads from Two Lung Cancer Cell Lines. doi:10.18129/B9.bioc.LungCancerLines, R package version 0.50.0, https://bioconductor.org/packages/LungCancerLines.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | LungCancerLines_0.50.0.tar.gz |
Dependencies
Imports: Rsamtools
Reverse dependencies
Suggests Me (2): gmapR, VariantTools