To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GeuvadisTranscriptExpr")

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GeuvadisTranscriptExpr

DOI: 10.18129/B9.bioc.GeuvadisTranscriptExpr    

Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project

Bioconductor version: Release (3.6)

Provides transcript expression and bi-allelic genotypes corresponding to the chromosome 19 for CEU individuals from the GEUVADIS project, Lappalainen et al.

Author: Malgorzata Nowicka [aut, cre]

Maintainer: Malgorzata Nowicka <gosia.nowicka at uzh.ch>

Citation (from within R, enter citation("GeuvadisTranscriptExpr")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GeuvadisTranscriptExpr")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeuvadisTranscriptExpr")

 

PDF R Script Preprocessing and preparation of transcript expression and genotypes from the GEUVADIS project for sQTL analysis
PDF   Reference Manual
Text   NEWS

Details

biocViews ExperimentData, ExpressionData, Genome, Homo_sapiens_Data, RNASeqData, SNPData, SequencingData
Version 1.6.0
License GPL (>= 3)
Depends R (>= 3.3.0)
Imports
LinkingTo
Suggests limma, rtracklayer, GenomicRanges, Rsamtools, VariantAnnotation, tools, BiocStyle, knitr, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me DRIMSeq
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GeuvadisTranscriptExpr_1.6.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/GeuvadisTranscriptExpr
Package Short Url http://bioconductor.org/packages/GeuvadisTranscriptExpr/
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