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AshkenazimSonChr21

Annotated variants on the chromosome 21, human genome 19, Ashkenazim Trio son sample


Bioconductor version: Release (3.18)

SonVariantsChr21 is a dataset of annotated genomic variants coming from Complete Genomics whole genome sequencing. Data comes from GIAB project, Ashkenazim Trio, sample HG002 run 1. Both vcf and annotated data frame are provided.

Author: Tomasz Stokowy

Maintainer: Who to complain to <tomasz.stokowy at k2.uib.no>

Citation (from within R, enter citation("AshkenazimSonChr21")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AshkenazimSonChr21")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AshkenazimSonChr21")
RareVariantVis PDF R Script
Reference Manual PDF

Details

biocViews ExperimentData, GenomicVariation, Sequencing, WholeGenome
Version 1.32.0
License Artistic-2.0
Depends
Imports
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URL
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Suggests knitr, VariantAnnotation
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AshkenazimSonChr21_1.32.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/AshkenazimSonChr21
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AshkenazimSonChr21
Package Short Url https://bioconductor.org/packages/AshkenazimSonChr21/
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