synaptome.data

DOI: 10.18129/B9.bioc.synaptome.data    

AnnotationData for Synaptome.DB package

Bioconductor version: Release (3.14)

The package provides access to the copy of the Synaptic proteome database. It was designed as an accompaniment for Synaptome.DB package. Database provides information for specific genes and allows building the protein-protein interaction graph for gene sets, synaptic compartments, and brain regions.

Author: Anatoly Sorokin [aut], Oksana Sorokina [aut, cre], J. Douglas Armstrong [aut]

Maintainer: Oksana Sorokina <oksana.sorokina at ed.ac.uk>

Citation (from within R, enter citation("synaptome.data")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("synaptome.data")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("synaptome.data")

 

HTML R Script data_vignette
PDF   Reference Manual

Details

biocViews AnnotationData, AnnotationHub, CustomDBSchema, FunctionalAnnotation
Version 0.99.3
License Artistic-2.0
Depends R (>= 3.5.0), AnnotationHub
Imports
LinkingTo
Suggests BiocStyle, knitr, RefManageR, rmarkdown, sessioninfo
SystemRequirements
Enhances
URL
BugReports https://github.com/lptolik/synaptome.db/issues/
Depends On Me synaptome.db
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package synaptome.data_0.99.3.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Package Short Url https://bioconductor.org/packages/synaptome.data/
Package Downloads Report Download Stats

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