TENET.AnnotationHub
Annotation data for the TENET package
Bioconductor version: 3.23 · Package version: 1.1.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
AnnotationHub package containing datasets for use in the TENET package. Includes GenomicRanges objects representing putative enhancer, promoter, and open chromatin regions. All included datasets are aligned to the hg38 human genome.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TENET.AnnotationHub")Details
| Maintainer | Rhie Lab at the University of Southern California <rhielab@gmail.com> |
| Author | Rhie Lab at the University of Southern California [cre], Daniel Mullen [aut] (ORCID: <https://orcid.org/0000-0002-7639-0549>), Zexun Wu [aut] (ORCID: <https://orcid.org/0000-0003-2566-1326>), Ethan Nelson-Moore [aut] (ORCID: <https://orcid.org/0009-0001-6903-9232>), Suhn Rhie [aut] (ORCID: <https://orcid.org/0000-0002-5522-5296>) |
| License | GPL-2 |
| URL | https://github.com/rhielab/TENET.AnnotationHub |
| Bug Reports | https://github.com/rhielab/TENET.AnnotationHub/issues |
| Source branch | RELEASE_3_23 |
| biocViews | AnnotationData, AnnotationHub, GenomicSequence, Homo_sapiens |
| Package Short Url | https://bioconductor.org/packages/TENET.AnnotationHub/ |
Citation
From within R, enter citation("TENET.AnnotationHub"):
Daniel Mullen, Zexun Wu, Ethan Nelson-Moore, Suhn Rhie. TENET.AnnotationHub: Annotation data for the TENET package. doi:10.18129/B9.bioc.TENET.AnnotationHub, R package version 1.1.0, https://bioconductor.org/packages/TENET.AnnotationHub.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | TENET.AnnotationHub_1.1.0.tar.gz |
Dependencies
Depends: R (>= 4.4)
Imports: AnnotationHub, GenomicRanges
Suggests: TENET, AnnotationHubData, testthat (>= 3.0.0), BiocManager, knitr, rmarkdown, BiocStyle
Reverse dependencies
Suggests Me (1): TENET