SNPlocs.Hsapiens.dbSNP155.GRCh38

DOI: 10.18129/B9.bioc.SNPlocs.Hsapiens.dbSNP155.GRCh38    

SNP locations and alleles for Homo sapiens (dbSNP Human Build 155)

Bioconductor version: Release (3.15)

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 155. The 948,979,291 SNPs in this package were extracted from the RefSNP JSON files for chromosomes 1-22, X, Y, and MT, located at https://ftp.ncbi.nih.gov/snp/latest_release/JSON/ (these files were created by NCBI on May 25, 2021). These SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or BSgenome.Hsapiens.UCSC.hg38.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Citation (from within R, enter citation("SNPlocs.Hsapiens.dbSNP155.GRCh38")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SNPlocs.Hsapiens.dbSNP155.GRCh38")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, Genetics, Homo_sapiens, SNPlocs
Version 0.99.21
License Artistic-2.0
Depends R (>= 4.2.0), BSgenome
Imports methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
LinkingTo
Suggests Biostrings, BSgenome.Hsapiens.UCSC.hg38
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SNPlocs.Hsapiens.dbSNP155.GRCh38_0.99.21.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Package Short Url https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP155.GRCh38/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: