MafDb.1Kgenomes.phase1.hs37d5
Minor allele frequency data from 1000 Genomes Phase 1 for hs37d5
Bioconductor version: 3.23 · Package version: 3.10.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Store minor allele frequency data from the Phase 1 of the 1000 Genomes Project for the human genome version hs37d5.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MafDb.1Kgenomes.phase1.hs37d5")Details
| Maintainer | Robert Castelo <robert.castelo@upf.edu> |
| Author | Robert Castelo [aut, cre] |
| License | Artistic-2.0 |
| Source branch | RELEASE_3_23 |
| biocViews | AnnotationData, Genetics, GenomicScores, Homo_sapiens |
| Package Short Url | https://bioconductor.org/packages/MafDb.1Kgenomes.phase1.hs37d5/ |
Citation
From within R, enter citation("MafDb.1Kgenomes.phase1.hs37d5"):
Robert Castelo. MafDb.1Kgenomes.phase1.hs37d5: Minor allele frequency data from 1000 Genomes Phase 1 for hs37d5. doi:10.18129/B9.bioc.MafDb.1Kgenomes.phase1.hs37d5, R package version 3.10.0, https://bioconductor.org/packages/MafDb.1Kgenomes.phase1.hs37d5.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | MafDb.1Kgenomes.phase1.hs37d5_3.10.0.tar.gz |
Dependencies
Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome
Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37
Reverse dependencies
Suggests Me (2): GenomicScores, VariantFiltering