Welcome to the new bioconductor.org!

EuPathDB

Provides access to pathogen annotation resources available on EuPathDB databases


Bioconductor version: Release (3.18)

Brings together annotation resources from the various EuPathDB databases (PlasmoDB, ToxoDB, TriTrypDB, etc.) and makes them available in R using the AnnotationHub framework.

Author: Keith Hughitt [aut, cre]

Maintainer: Keith Hughitt <keith.hughitt at gmail.com>

Citation (from within R, enter citation("EuPathDB")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EuPathDB")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EuPathDB")
Accessing EuPathDB Resources using AnnotationHub HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews AnnotationData, AnnotationHub, DataImport, EuPathDB
Version 1.0.1
License Artistic-2.0
Depends R (>= 3.5), Biobase, GenomicRanges, GenomeInfoDbData, AnnotationHub(>= 2.13.8)
Imports AnnotationHubData, Biostrings, BiocManager, utils
System Requirements
URL https://github.com/khughitt/EuPathDB
Bug Reports https://github.com/khughitt/EuPathDB/issues
See More
Suggests dplyr, knitr, BiocStyle, rmarkdown, jsonlite
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EuPathDB_1.0.1.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/EuPathDB/
Package Downloads Report Download Stats