EuPathDB
Provides access to pathogen annotation resources available on EuPathDB databases
Bioconductor version: Release (3.19)
Brings together annotation resources from the various EuPathDB databases (PlasmoDB, ToxoDB, TriTrypDB, etc.) and makes them available in R using the AnnotationHub framework.
Author: Keith Hughitt [aut, cre]
Maintainer: Keith Hughitt <keith.hughitt at gmail.com>
Citation (from within R, enter
citation("EuPathDB")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("EuPathDB")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("EuPathDB")
Accessing EuPathDB Resources using AnnotationHub | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | AnnotationData, AnnotationHub, DataImport, EuPathDB |
Version | 1.0.1 |
License | Artistic-2.0 |
Depends | R (>= 3.5), Biobase, GenomicRanges, GenomeInfoDbData, AnnotationHub(>= 2.13.8) |
Imports | AnnotationHubData, Biostrings, BiocManager, utils |
System Requirements | |
URL | https://github.com/khughitt/EuPathDB |
Bug Reports | https://github.com/khughitt/EuPathDB/issues |
See More
Suggests | dplyr, knitr, BiocStyle, rmarkdown, jsonlite |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | EuPathDB_1.0.1.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Package Short Url | https://bioconductor.org/packages/EuPathDB/ |
Package Downloads Report | Download Stats |