BSgenome.Hsapiens.UCSC.hg18

Full genome sequences for Homo sapiens (UCSC version hg18)

Bioconductor version: 3.23 · Package version: 1.3.1000

Other Bioconductor versions

devel is the development version; release is the current stable one.

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg18, Mar. 2006) and stored in Biostrings objects.

DOI: 10.18129/B9.bioc.BSgenome.Hsapiens.UCSC.hg18

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Hsapiens.UCSC.hg18")

Details

Maintainer	Bioconductor Package Maintainer <maintainer@bioconductor.org>
Author	The Bioconductor Dev Team
License	Artistic-2.0
Source branch	RELEASE_3_23
biocViews	AnnotationData, BSgenome, Genetics, Homo_sapiens
Package Short Url	https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg18/

Citation

From within R, enter citation("BSgenome.Hsapiens.UCSC.hg18"):

The Bioconductor Dev Team. BSgenome.Hsapiens.UCSC.hg18: Full genome sequences for Homo sapiens (UCSC version hg18). doi:10.18129/B9.bioc.BSgenome.Hsapiens.UCSC.hg18, R package version 1.3.1000, https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg18.

Generated from the package metadata; it may differ from the package's own citation.

Download

Follow the installation instructions to use this package in your R session.

Source package

BSgenome.Hsapiens.UCSC.hg18_1.3.1000.tar.gz

Dependencies

Depends: BSgenome (>= 1.33.5)

Imports: BSgenome

Suggests: TxDb.Hsapiens.UCSC.hg18.knownGene

Reverse dependencies

Depends On Me (1): BSgenome.Hsapiens.UCSC.hg18.masked

Imports Me (2): BSgenome.Hsapiens.UCSC.hg18.masked, VanillaICE

Suggests Me (8): Biostrings, CAGEr, HiTC, ListerEtAlBSseq, MEDME, methylPipe, MinimumDistance, oligo