Welcome to the new bioconductor.org!

BSgenome.Btaurus.UCSC.bosTau9.masked

Full masked genome sequences for Bos taurus (UCSC version bosTau9)


Bioconductor version: Release (3.18)

Full genome sequences for Bos taurus (Cow) as provided by UCSC (genome bosTau9) and stored in Biostrings objects. The sequences are the same as in BSgenome.Btaurus.UCSC.bosTau9, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Btaurus.UCSC.bosTau9.masked")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Btaurus.UCSC.bosTau9.masked")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, BSgenome, Bos_taurus, Genetics
Version 1.4.4
License Artistic-2.0
Depends R (>= 3.5.0), BSgenome(>= 1.62.0), BSgenome.Btaurus.UCSC.bosTau9
Imports BSgenome, BSgenome.Btaurus.UCSC.bosTau9
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BSgenome.Btaurus.UCSC.bosTau9.masked_1.4.4.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/BSgenome.Btaurus.UCSC.bosTau9.masked/
Package Downloads Report Download Stats