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wiggleplotr

This is the released version of wiggleplotr; for the devel version, see wiggleplotr.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5

Make read coverage plots from BigWig files

DOI: 10.18129/B9.bioc.wiggleplotr

Bioconductor version: Release (3.23)

Tools to visualise read coverage from sequencing experiments together with genomic annotations (genes, transcripts, peaks). Introns of long transcripts can be rescaled to a fixed length for better visualisation of exonic read coverage.

Author: Kaur Alasoo [aut, cre]

Maintainer: Kaur Alasoo <kaur.alasoo at gmail.com>

Citation (from within R, enter citation("wiggleplotr")):

Kaur Alasoo. wiggleplotr: Make read coverage plots from BigWig files. doi:10.18129/B9.bioc.wiggleplotr, R package version 1.36.0, https://bioconductor.org/packages/wiggleplotr.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("wiggleplotr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("wiggleplotr")

Details

Package Archives

Follow Installation instructions to use this package in your R session.