wateRmelon
This is the released version of wateRmelon; for the devel version, see wateRmelon.
All Bioconductor versions of wateRmelon
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12
Illumina DNA methylation array normalization and metrics
Bioconductor version: 3.23 · Package version: 2.18.0
15 flavours of betas and three performance metrics, with methods for objects produced by methylumi and minfi packages.
Author: Leo C Schalkwyk [cre, aut], Tyler J Gorrie-Stone [aut], Ruth Pidsley [aut], Chloe CY Wong [aut], Nizar Touleimat [ctb], Matthieu Defrance [ctb], Andrew Teschendorff [ctb], Jovana Maksimovic [ctb], Louis Y El Khoury [ctb], Yucheng Wang [ctb], Alexandria Andrayas [ctb]
Maintainer: Leo C Schalkwyk <lschal at essex.ac.uk>
Citation
From within R, enter citation("wateRmelon"):
Leo C Schalkwyk, Tyler J Gorrie-Stone, Ruth Pidsley, Chloe CY Wong. wateRmelon: Illumina DNA methylation array normalization and metrics. doi:10.18129/B9.bioc.wateRmelon, R package version 2.18.0, https://bioconductor.org/packages/wateRmelon.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("wateRmelon")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 2.18.0 |
| License | GPL-3 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.12 (R-3.0) (13 years) |
| Downloads rank | 271 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel |
| Package Short Url | https://bioconductor.org/packages/wateRmelon/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("wateRmelon")| The wateRmelon User's Guide | HTML | R Script |
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | wateRmelon_2.18.0.tar.gz |
| Windows binary (x86_64) | wateRmelon_2.18.0.zip |
| macOS binary (arm64) | wateRmelon_2.18.0.tgz |
| macOS binary (x86_64) | wateRmelon_2.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/wateRmelon |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/wateRmelon |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.5.0), Biobase, limma, methods, matrixStats, methylumi, lumi, ROC, IlluminaHumanMethylation450kanno.ilmn12.hg19, illuminaio
Imports: Biobase
Suggests: RPMM, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, BiocStyle, knitr, rmarkdown, IlluminaHumanMethylationEPICmanifest, irlba, FlowSorted.Blood.EPIC, FlowSorted.Blood.450k, preprocessCore
Enhances: minfi