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viper

Virtual Inference of Protein-activity by Enriched Regulon analysis


Bioconductor version: Release (3.19)

Inference of protein activity from gene expression data, including the VIPER and msVIPER algorithms

Author: Mariano J Alvarez <reef103 at gmail.com>

Maintainer: Mariano J Alvarez <reef103 at gmail.com>

Citation (from within R, enter citation("viper")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("viper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("viper")
Using VIPER PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews FunctionalPrediction, GeneExpression, GeneRegulation, NetworkEnrichment, Software, SystemsBiology
Version 1.38.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License file LICENSE
Depends R (>= 2.14.0), Biobase, methods
Imports mixtools, stats, parallel, e1071, KernSmooth
System Requirements
URL
See More
Suggests bcellViper
Linking To
Enhances
Depends On Me vulcan, aracne.networks
Imports Me diggit, RTN, diggitdata
Suggests Me decoupleR, easier, MethReg, MOMA, dorothea, vulcandata
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package viper_1.38.0.tar.gz
Windows Binary viper_1.38.0.zip
macOS Binary (x86_64) viper_1.38.0.tgz
macOS Binary (arm64) viper_1.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/viper
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/viper
Bioc Package Browser https://code.bioconductor.org/browse/viper/
Package Short Url https://bioconductor.org/packages/viper/
Package Downloads Report Download Stats