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traseR

GWAS trait-associated SNP enrichment analyses in genomic intervals


Bioconductor version: Release (3.18)

traseR performs GWAS trait-associated SNP enrichment analyses in genomic intervals using different hypothesis testing approaches, also provides various functionalities to explore and visualize the results.

Author: Li Chen, Zhaohui S.Qin

Maintainer: li chen<li.chen at emory.edu>

Citation (from within R, enter citation("traseR")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("traseR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("traseR")
Perform GWAS trait-associated SNP enrichment analyses in genomic intervals PDF R Script
Reference Manual PDF

Details

biocViews Alignment, Coverage, DataImport, Genetics, QualityControl, Sequencing, Software
Version 1.32.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL
Depends R (>= 3.5.0), GenomicRanges, IRanges, BSgenome.Hsapiens.UCSC.hg19
Imports
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Suggests BiocStyle, RUnit, BiocGenerics
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package traseR_1.32.0.tar.gz
Windows Binary traseR_1.32.0.zip (64-bit only)
macOS Binary (x86_64) traseR_1.32.0.tgz
macOS Binary (arm64) traseR_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/traseR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/traseR
Bioc Package Browser https://code.bioconductor.org/browse/traseR/
Package Short Url https://bioconductor.org/packages/traseR/
Package Downloads Report Download Stats