tomoseqr
R Package for Analyzing Tomo-seq Data
Bioconductor version: 3.23 · Package version: 1.16.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
`tomoseqr` is an R package for analyzing Tomo-seq data. Tomo-seq is a genome-wide RNA tomography method that combines combining high-throughput RNA sequencing with cryosectioning for spatially resolved transcriptomics. `tomoseqr` reconstructs 3D expression patterns from tomo-seq data and visualizes the reconstructed 3D expression patterns.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tomoseqr")Details
| Maintainer | Ryosuke Matsuzawa <kinakomochi.work@gmail.com> |
| Author | Ryosuke Matsuzawa [aut, cre] (ORCID: <https://orcid.org/0000-0003-2999-4734>) |
| License | MIT + file LICENSE |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneExpression, RNASeq, Sequencing, Software, Spatial, Transcriptomics, Visualization |
| Package Short Url | https://bioconductor.org/packages/tomoseqr/ |
Citation
From within R, enter citation("tomoseqr"):
Ryosuke Matsuzawa. tomoseqr: R Package for Analyzing Tomo-seq Data. doi:10.18129/B9.bioc.tomoseqr, R package version 1.16.0, https://bioconductor.org/packages/tomoseqr.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | tomoseqr_1.16.0.tar.gz |
| Windows binary (x86_64) | tomoseqr_1.16.0.zip |
| macOS binary (arm64) | tomoseqr_1.16.0.tgz |
| macOS binary (x86_64) | tomoseqr_1.16.0.tgz |