subSeq

This is the released version of subSeq; for the devel version, see subSeq.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2

Subsampling of high-throughput sequencing count data

Bioconductor version: Release (3.23)

Subsampling of high throughput sequencing count data for use in experiment design and analysis.

Author: David Robinson, John D. Storey, with contributions from Andrew J. Bass

Maintainer: Andrew J. Bass <ajbass at princeton.edu>, John D. Storey <jstorey at princeton.edu>

Citation (from within R, enter citation("subSeq")):

David Robinson, John D. Storey, with contributions from Andrew J. Bass. subSeq: Subsampling of high-throughput sequencing count data. doi:10.18129/B9.bioc.subSeq, R package version 1.42.0, https://bioconductor.org/packages/subSeq.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("subSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("subSeq")

subSeq Example	PDF	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription
Version	1.42.0
In Bioconductor since	BioC 3.2 (R-3.2) (11 years)
License	MIT + file LICENSE
Depends	R (>= 3.2)
Imports	data.table, dplyr, tidyr, ggplot2, magrittr, qvalue (>= 1.99), digest, Biobase
System Requirements
URL	http://github.com/StoreyLab/subSeq

Suggests	limma, edgeR, DESeq2, DEXSeq (>= 1.9.7), testthat, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	subSeq_1.42.0.tar.gz
Windows Binary (x86_64)	subSeq_1.42.0.zip
macOS Binary (big-sur-x86_64)	subSeq_1.42.0.tgz
macOS Binary (sonoma-arm64)	subSeq_1.42.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/subSeq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/subSeq
Package Short Url	https://bioconductor.org/packages/subSeq/
Package Downloads Report	Download Stats