sigFeature

DOI: 10.18129/B9.bioc.sigFeature    

sigFeature: Significant feature selection using SVM-RFE & t-statistic

Bioconductor version: Release (3.8)

This package provides a novel feature selection algorithm for binary classification using support vector machine recursive feature elimination SVM-RFE and t-statistic. In this feature selection process, the selected features are differentially significant between the two classes and also they are good classifier with higher degree of classification accuracy.

Author: Pijush Das Developer [aut, cre], Dr. Susanta Roychudhury User [ctb], Dr. Sucheta Tripathy User [ctb]

Maintainer: Pijush Das Developer <topijush at gmail.com>

Citation (from within R, enter citation("sigFeature")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("sigFeature", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sigFeature")

 

PDF R Script sigFeature
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Classification, FeatureExtraction, GeneExpression, GenePrediction, Microarray, Normalization, Software, SupportVectorMachine, Transcription, mRNAMicroarray
Version 1.0.0
License GPL
Depends R (>= 3.5.0)
Imports biocViews, nlme, e1071, openxlsx, pheatmap, RColorBrewer, Matrix, SparseM, graphics, stats, utils, SummarizedExperiment, BiocParallel, methods
LinkingTo
Suggests RUnit, BiocGenerics, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sigFeature_1.0.0.tar.gz
Windows Binary sigFeature_1.0.0.zip
Mac OS X 10.11 (El Capitan) sigFeature_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/sigFeature
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sigFeature
Package Short Url http://bioconductor.org/packages/sigFeature/
Package Downloads Report Download Stats

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