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Hexbin plots for single cell omics data

Bioconductor version: Release (3.19)

Builds hexbin plots for variables and dimension reduction stored in single cell omics data such as SingleCellExperiment. The ideas used in this package are based on the excellent work of Dan Carr, Nicholas Lewin-Koh, Martin Maechler and Thomas Lumley.

Author: Saskia Freytag [aut, cre], Wancheng Tang [ctb], Zimo Peng [ctb], Jingxiu Huang [ctb]

Maintainer: Saskia Freytag <freytag.s at>

Citation (from within R, enter citation("schex")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Seurat_to_SCE HTML R Script
using_schex HTML R Script
Reference Manual PDF


biocViews DataImport, DimensionReduction, ImmunoOncology, Sequencing, SingleCell, Software, Visualization
Version 1.18.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License GPL-3
Depends SingleCellExperiment(>= 1.7.4), ggplot2 (>= 3.2.1)
Imports hexbin, stats, methods, cluster, dplyr, entropy, ggforce, grid, rlang, concaveman
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Suggests ggrepel, knitr, rmarkdown, testthat (>= 2.1.0), covr, TENxPBMCData, scater, Seurat, shinydashboard, iSEE, igraph, scran, tibble, scuttle
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Depends On Me
Imports Me scTensor, scTGIF
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Follow Installation instructions to use this package in your R session.

Source Package schex_1.18.0.tar.gz
Windows Binary (64-bit only)
macOS Binary (x86_64) schex_1.18.0.tgz
macOS Binary (arm64) schex_1.18.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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