scTGIF
Cell type annotation for unannotated single-cell RNA-Seq data
Bioconductor version: 3.23 · Package version: 1.26.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
scTGIF connects the cells and the related gene functions without cell type label.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scTGIF")Details
| Maintainer | Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp> |
| Author | Koki Tsuyuzaki [aut, cre] |
| License | Artistic-2.0 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DimensionReduction, GeneExpression, QualityControl, SingleCell, Software |
| Package Short Url | https://bioconductor.org/packages/scTGIF/ |
Citation
From within R, enter citation("scTGIF"):
Koki Tsuyuzaki. scTGIF: Cell type annotation for unannotated single-cell RNA-Seq data. doi:10.18129/B9.bioc.scTGIF, R package version 1.26.0, https://bioconductor.org/packages/scTGIF.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | scTGIF_1.26.0.tar.gz |
| Windows binary (x86_64) | scTGIF_1.26.0.zip |
| macOS binary (arm64) | scTGIF_1.26.0.tgz |
| macOS binary (x86_64) | scTGIF_1.26.0.tgz |
Dependencies
Depends: R (>= 3.6.0)
Imports: GSEABase, Biobase, SingleCellExperiment, BiocStyle, plotly, tagcloud, rmarkdown, Rcpp, grDevices, graphics, utils, knitr, S4Vectors, SummarizedExperiment, RColorBrewer, nnTensor, methods, scales, msigdbr, schex, tibble, ggplot2, igraph
Suggests: testthat
Reverse dependencies
Suggests Me (1): scTensor