rsemmed

DOI: 10.18129/B9.bioc.rsemmed    

An interface to the Semantic MEDLINE database

Bioconductor version: Release (3.12)

A programmatic interface to the Semantic MEDLINE database. It provides functions for searching the database for concepts and finding paths between concepts. Path searching can also be tailored to user specifications, such as placing restrictions on concept types and the type of link between concepts. It also provides functions for summarizing and visualizing those paths.

Author: Leslie Myint [aut, cre]

Maintainer: Leslie Myint <leslie.myint at gmail.com>

Citation (from within R, enter citation("rsemmed")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rsemmed")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rsemmed")

 

HTML R Script rsemmed User's Guide
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Pathways, Software, SystemsBiology
Version 1.0.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License Artistic-2.0
Depends R (>= 4.0), igraph
Imports methods, magrittr, stringr, dplyr
LinkingTo
Suggests testthat, knitr, BiocStyle, rmarkdown
SystemRequirements
Enhances
URL https://github.com/lmyint/rsemmed
BugReports https://github.com/lmyint/rsemmed/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rsemmed_1.0.0.tar.gz
Windows Binary rsemmed_1.0.0.zip
macOS 10.13 (High Sierra) rsemmed_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rsemmed
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rsemmed
Package Short Url https://bioconductor.org/packages/rsemmed/
Package Downloads Report Download Stats

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