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Benchmarks for RNA-seq Quantification Pipelines

Bioconductor version: Release (3.18)

Several quantitative and visualized benchmarks for RNA-seq quantification pipelines. Two-condition quantifications for genes, transcripts, junctions or exons by each pipeline with necessary meta information should be organized into numeric matrices in order to proceed the evaluation.

Author: Mingxiang Teng and Rafael A. Irizarry

Maintainer: Mingxiang Teng <tengmx at>

Citation (from within R, enter citation("rnaseqcomp")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

The rnaseqcomp user's guide HTML R Script
Reference Manual PDF


biocViews QualityControl, RNASeq, Software, Visualization
Version 1.32.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL-3
Depends R (>= 3.2.0)
Imports RColorBrewer, methods
System Requirements
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Suggests BiocStyle, knitr, rmarkdown
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Follow Installation instructions to use this package in your R session.

Source Package rnaseqcomp_1.32.0.tar.gz
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macOS Binary (x86_64) rnaseqcomp_1.32.0.tgz
macOS Binary (arm64) rnaseqcomp_1.32.0.tgz
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Source Repository (Developer Access) git clone
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