rmelting

DOI: 10.18129/B9.bioc.rmelting    

R Interface to MELTING 5

Bioconductor version: Release (3.9)

R interface to the MELTING 5 program () to compute melting temperatures of nucleic acid duplexes along with other thermodynamic parameters.

Author: J. Aravind [aut, cre] , G. K. Krishna [aut], Bob Rudis [ctb] (melting5jars), Nicolas Le Novère [ctb] (MELTING 5 Java Library), Marine Dumousseau [ctb] (MELTING 5 Java Library), William John Gowers [ctb] (MELTING 5 Java Library)

Maintainer: J. Aravind <j.aravind at icar.gov.in>

Citation (from within R, enter citation("rmelting")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rmelting")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rmelting")

 

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Details

biocViews BiomedicalInformatics, Cheminformatics, Software
Version 1.0.0
In Bioconductor since BioC 3.9 (R-3.6) (< 6 months)
License GPL-2 | GPL-3
Depends R (>= 3.6)
Imports Rdpack, rJava (>= 0.5-0)
LinkingTo
Suggests readxl, knitr, rmarkdown, reshape2, pander, testthat
SystemRequirements Java
Enhances
URL https://github.com/aravind-j/rmelting https://aravind-j.github.io/PGRdup/
BugReports https://github.com/aravind-j/rmelting/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rmelting_1.0.0.tar.gz
Windows Binary rmelting_1.0.0.zip
Mac OS X 10.11 (El Capitan) rmelting_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rmelting
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rmelting
Package Short Url http://bioconductor.org/packages/rmelting/
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