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ribor

An R Interface for Ribo Files


Bioconductor version: Release (3.18)

The ribor package provides an R Interface for .ribo files. It provides functionality to read the .ribo file, which is of HDF5 format, and performs common analyses on its contents.

Author: Michael Geng [cre, aut], Hakan Ozadam [aut], Can Cenik [aut]

Maintainer: Michael Geng <michaelgeng at utexas.edu>

Citation (from within R, enter citation("ribor")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ribor")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ribor")
A Walkthrough of RiboR HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software
Version 1.14.0
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License GPL-3
Depends R (>= 3.6.0)
Imports dplyr, ggplot2, hash, methods, rhdf5, rlang, stats, S4Vectors, tidyr, tools, yaml
System Requirements
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Suggests testthat, knitr, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ribor_1.14.0.tar.gz
Windows Binary ribor_1.14.0.zip
macOS Binary (x86_64) ribor_1.14.0.tgz
macOS Binary (arm64) ribor_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ribor
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ribor
Bioc Package Browser https://code.bioconductor.org/browse/ribor/
Package Short Url https://bioconductor.org/packages/ribor/
Package Downloads Report Download Stats