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rhdf5client

Access HDF5 content from HDF Scalable Data Service

Bioconductor version: 3.23 · Package version: 1.34.2

Other Bioconductor versions

devel is the development version; release is the current stable one.

3.24 (devel), 3.23 (release)

This package provides functionality for reading data from HDF Scalable Data Service from within R. The HSDSArray function bridges from HSDS to the user via the DelayedArray interface. Bioconductor manages an open HSDS instance graciously provided by John Readey of the HDF Group.

DOI: 10.18129/B9.bioc.rhdf5client

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rhdf5client")

Details

MaintainerAlexey Sergushichev <alsergbox@gmail.com>
AuthorSamuela Pollack [aut], Shweta Gopaulakrishnan [aut], BJ Stubbs [aut], Alexey Sergushichev [aut, cre], Vincent Carey [aut]
LicenseArtistic-2.0
Source branchRELEASE_3_23
Build report Bioconductor build system, r-universe
biocViewsDataImport, Infrastructure, Software
Package Short Url https://bioconductor.org/packages/rhdf5client/

Citation

From within R, enter citation("rhdf5client"):

Samuela Pollack, Shweta Gopaulakrishnan, BJ Stubbs, Alexey Sergushichev, Vincent Carey. rhdf5client: Access HDF5 content from HDF Scalable Data Service. doi:10.18129/B9.bioc.rhdf5client, R package version 1.34.2, https://bioconductor.org/packages/rhdf5client.

Generated from the package metadata; it may differ from the package's own citation.

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagerhdf5client_1.34.2.tar.gz
Windows binary (x86_64)rhdf5client_1.34.2.zip
macOS binary (arm64)rhdf5client_1.34.2.tgz
macOS binary (x86_64)rhdf5client_1.34.2.tgz
Dependencies

Depends: R (>= 3.6), methods, DelayedArray

Imports: httr, rjson, utils, data.table

Suggests: knitr, testthat, BiocStyle, DT, rmarkdown

Reverse dependencies

Imports Me (2): phantasus, phantasusLite