rBLAST

R Interface for the Basic Local Alignment Search Tool


Bioconductor version: Release (3.19)

Seamlessly interfaces the Basic Local Alignment Search Tool (BLAST) to search genetic sequence data bases. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute.

Author: Michael Hahsler [aut, cre] , Nagar Anurag [aut]

Maintainer: Michael Hahsler <mhahsler at lyle.smu.edu>

Citation (from within R, enter citation("rBLAST")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rBLAST")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rBLAST")
rBLAST: R Interface for the Basic Local Alignment Search Tool HTML R Script
Reference Manual PDF
NEWS Text
INSTALL Text

Details

biocViews Alignment, DataImport, Genetics, SequenceMatching, Sequencing, Software
Version 1.0.0
In Bioconductor since BioC 3.19 (R-4.4) (< 6 months)
License GPL-3
Depends Biostrings(>= 2.26.2)
Imports methods, utils, BiocFileCache
System Requirements ncbi-blast+
URL https://github.com/mhahsler/rBLAST
Bug Reports https://github.com/mhahsler/rBLAST/issues
See More
Suggests knitr, rmarkdown, testthat
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rBLAST_1.0.0.tar.gz
Windows Binary (x86_64) rBLAST_1.0.0.zip (64-bit only)
macOS Binary (x86_64) rBLAST_1.0.0.tgz
macOS Binary (arm64) rBLAST_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rBLAST
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rBLAST
Bioc Package Browser https://code.bioconductor.org/browse/rBLAST/
Package Short Url https://bioconductor.org/packages/rBLAST/
Package Downloads Report Download Stats