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projectR

This is the released version of projectR; for the devel version, see projectR.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9

Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering


Bioconductor version: Release (3.23)

Functions for the projection of data into the spaces defined by PCA, CoGAPS, NMF, correlation, and clustering.

Author: Gaurav Sharma, Charles Shin, Jared Slosberg, Loyal Goff, Genevieve Stein-O'Brien

Maintainer: Genevieve Stein-O'Brien <gsteinobrien at gmail.com>

Citation (from within R, enter citation("projectR")):

Gaurav Sharma, Charles Shin, Jared Slosberg, Loyal Goff, Genevieve Stein-O'Brien. projectR: Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering. doi:10.18129/B9.bioc.projectR, R package version 1.28.0, https://bioconductor.org/packages/projectR.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("projectR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("projectR")
projectR HTML R Script
Reference ManualPDF
LICENSEText

Details

biocViews BiologicalQuestion, FunctionalPrediction, GeneRegulation, Software
Version1.28.0
In Bioconductor sinceBioC 3.9 (R-3.6) (7.5 years)
License GPL (==2)
Depends R (>= 4.0.0)
Imports SingleCellExperiment, methods, cluster, stats, limma, NMF, ROCR, ggalluvial, RColorBrewer, dplyr, fgsea, reshape2, viridis, scales, Matrix, MatrixModels, msigdbr, ggplot2, cowplot, ggrepel, umap, tsne
System Requirements
URLhttps://github.com/genesofeve/projectR/
Bug Reportshttps://support.bioconductor.org/t/projectR/
See More
Suggests BiocStyle, CoGAPS, gridExtra, grid, testthat, devtools, knitr, rmarkdown, ComplexHeatmap, gplots, SeuratObject
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
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Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package projectR_1.28.0.tar.gz
Windows Binary (x86_64) projectR_1.28.0.zip
macOS Binary (big-sur-x86_64) projectR_1.28.0.tgz
macOS Binary (sonoma-arm64) projectR_1.28.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/projectR
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/projectR
Package Short Url https://bioconductor.org/packages/projectR/
Package Downloads ReportDownload Stats