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procoil

Prediction of Oligomerization of Coiled Coil Proteins


Bioconductor version: Release (3.18)

The package allows for predicting whether a coiled coil sequence (amino acid sequence plus heptad register) is more likely to form a dimer or more likely to form a trimer. Additionally to the prediction itself, a prediction profile is computed which allows for determining the strengths to which the individual residues are indicative for either class. Prediction profiles can also be visualized as curves or heatmaps.

Author: Ulrich Bodenhofer

Maintainer: Ulrich Bodenhofer <bodenhofer at bioinf.jku.at>

Citation (from within R, enter citation("procoil")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("procoil")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("procoil")
PrOCoil - A Web Service and an R Package for Predicting the Oligomerization of Coiled-Coil Proteins PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Classification, Proteomics, Software, SupportVectorMachine
Version 2.30.0
In Bioconductor since BioC 2.8 (R-2.13) (13 years)
License GPL (>= 2)
Depends R (>= 3.3.0), kebabs
Imports methods, stats, graphics, S4Vectors, Biostrings, utils
System Requirements
URL http://www.bioinf.jku.at/software/procoil/ https://github.com/UBod/procoil
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package procoil_2.30.0.tar.gz
Windows Binary procoil_2.30.0.zip
macOS Binary (x86_64) procoil_2.30.0.tgz
macOS Binary (arm64) procoil_2.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/procoil
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/procoil
Bioc Package Browser https://code.bioconductor.org/browse/procoil/
Package Short Url https://bioconductor.org/packages/procoil/
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