pogos

This is the released version of pogos; for the devel version, see pogos.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

PharmacOGenomics Ontology Support

Bioconductor version: Release (3.23)

Provide simple utilities for querying bhklab PharmacoDB, modeling API outputs, and integrating to cell and compound ontologies.

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("pogos")):

Vince Carey. pogos: PharmacOGenomics Ontology Support. doi:10.18129/B9.bioc.pogos, R package version 1.32.0, https://bioconductor.org/packages/pogos.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pogos")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pogos")

pogos -- simple interface to bhklab PharmacoDB with emphasis on ontology	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ImmunoOncology, Pharmacogenomics, PooledScreens, Software
Version	1.32.0
In Bioconductor since	BioC 3.7 (R-3.5) (8.5 years)
License	Artistic-2.0
Depends	R (>= 3.5.0), rjson (>= 0.2.15), httr (>= 1.3.1)
Imports	methods, S4Vectors, utils, shiny, ontoProc, ggplot2, graphics
System Requirements
URL

Suggests	knitr, DT, ontologyPlot, testthat, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	pogos_1.32.0.tar.gz
Windows Binary (x86_64)	pogos_1.32.0.zip
macOS Binary (big-sur-x86_64)	pogos_1.32.0.tgz
macOS Binary (sonoma-arm64)	pogos_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/pogos
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/pogos
Package Short Url	https://bioconductor.org/packages/pogos/
Package Downloads Report	Download Stats