plotGrouper
Shiny app GUI wrapper for ggplot with built-in statistical analysis
Bioconductor version: 3.23 · Package version: 1.30.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
A shiny app-based GUI wrapper for ggplot with built-in statistical analysis. Import data from file and use dropdown menus and checkboxes to specify the plotting variables, graph type, and look of your plots. Once created, plots can be saved independently or stored in a report that can be saved as a pdf. If new data are added to the file, the report can be refreshed to include new data. Statistical tests can be selected and added to the graphs. Analysis of flow cytometry data is especially integrated with plotGrouper. Count data can be transformed to return the absolute number of cells in a sample (this feature requires inclusion of the number of beads per sample and information about any dilution performed).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("plotGrouper")Details
| Maintainer | John D. Gagnon <john.gagnon.42@gmail.com> |
| Author | John D. Gagnon [aut, cre] |
| License | GPL-3 |
| URL | https://jdgagnon.github.io/plotGrouper/ |
| Bug Reports | https://github.com/jdgagnon/plotGrouper/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, FlowCytometry, GUI, GraphAndNetwork, ImmunoOncology, MultipleComparison, Software, StatisticalMethod |
| Package Short Url | https://bioconductor.org/packages/plotGrouper/ |
Citation
From within R, enter citation("plotGrouper"):
John D. Gagnon. plotGrouper: Shiny app GUI wrapper for ggplot with built-in statistical analysis. doi:10.18129/B9.bioc.plotGrouper, R package version 1.30.0, https://bioconductor.org/packages/plotGrouper.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | plotGrouper_1.30.0.tar.gz |
| Windows binary (x86_64) | plotGrouper_1.30.0.zip |
| macOS binary (arm64) | plotGrouper_1.30.0.tgz |
| macOS binary (x86_64) | plotGrouper_1.30.0.tgz |
Dependencies
Depends: R (>= 3.5)
Imports: ggplot2 (>= 3.0.0), dplyr (>= 0.7.6), tidyr (>= 0.2.0), tibble (>= 1.4.2), stringr (>= 1.3.1), readr (>= 1.1.1), readxl (>= 1.1.0), scales (>= 1.0.0), stats, grid, gridExtra (>= 2.3), egg (>= 0.4.0), gtable (>= 0.2.0), ggpubr (>= 0.1.8), shiny (>= 1.1.0), shinythemes (>= 1.1.1), colourpicker (>= 1.0), magrittr (>= 1.5), Hmisc (>= 4.1.1), rlang (>= 0.2.2)