phosphonormalizer
Compensates for the bias introduced by median normalization in
Bioconductor version: 3.23 · Package version: 1.36.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
It uses the overlap between enriched and non-enriched datasets to compensate for the bias introduced in global phosphorylation after applying median normalization.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("phosphonormalizer")Details
| Maintainer | Sohrab Saraei <sohrab.saraei@blueprintgenetics.com> |
| Author | Sohrab Saraei [aut, cre], Tomi Suomi [ctb], Otto Kauko [ctb], Laura Elo [ths] |
| License | GPL (>= 2) |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Normalization, Proteomics, Software, StatisticalMethod, WorkflowStep |
| Package Short Url | https://bioconductor.org/packages/phosphonormalizer/ |
Citation
From within R, enter citation("phosphonormalizer"):
Sohrab Saraei. phosphonormalizer: Compensates for the bias introduced by median normalization in. doi:10.18129/B9.bioc.phosphonormalizer, R package version 1.36.0, https://bioconductor.org/packages/phosphonormalizer.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
- phosphonormalizer: Pairwise normalization of phosphoproteomics data
- phosphonormalizer: Phosphoproteomics Normalization
Download
Follow the installation instructions to use this package in your R session.
| Source package | phosphonormalizer_1.36.0.tar.gz |
| Windows binary (x86_64) | phosphonormalizer_1.36.0.zip |
| macOS binary (arm64) | phosphonormalizer_1.36.0.tgz |
| macOS binary (x86_64) | phosphonormalizer_1.36.0.tgz |