pgxRpi
R wrapper for Progenetix
Bioconductor version: 3.23 · Package version: 1.7.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The package is an R wrapper for Progenetix REST API built upon the Beacon v2 protocol. Its purpose is to provide a seamless way for retrieving genomic data from Progenetix database—an open resource dedicated to curated oncogenomic profiles. Empowered by this package, users can effortlessly access and visualize data from Progenetix.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pgxRpi")Details
| Maintainer | Hangjia Zhao <hangjia.zhao@uzh.ch> |
| Author | Hangjia Zhao [aut, cre] (ORCID: <https://orcid.org/0000-0001-8376-5751>), Michael Baudis [aut] (ORCID: <https://orcid.org/0000-0002-9903-4248>) |
| License | Artistic-2.0 |
| URL | https://github.com/progenetix/pgxRpi |
| Bug Reports | https://github.com/progenetix/pgxRpi/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | CopyNumberVariation, DataImport, GenomicVariation, Software |
| Package Short Url | https://bioconductor.org/packages/pgxRpi/ |
Citation
From within R, enter citation("pgxRpi"):
Hangjia Zhao, Michael Baudis. pgxRpi: R wrapper for Progenetix. doi:10.18129/B9.bioc.pgxRpi, R package version 1.7.0, https://bioconductor.org/packages/pgxRpi.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | pgxRpi_1.7.0.tar.gz |
| Windows binary (x86_64) | pgxRpi_1.7.0.zip |
| macOS binary (arm64) | pgxRpi_1.7.0.tgz |
| macOS binary (x86_64) | pgxRpi_1.7.0.tgz |