pathifier
Quantify deregulation of pathways in cancer
Bioconductor version: 3.23 · Package version: 1.50.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Pathifier is an algorithm that infers pathway deregulation scores for each tumor sample on the basis of expression data. This score is determined, in a context-specific manner, for every particular dataset and type of cancer that is being investigated. The algorithm transforms gene-level information into pathway-level information, generating a compact and biologically relevant representation of each sample.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pathifier")Details
| Maintainer | Assif Yitzhaky <assif.yitzhaky@weizmann.ac.il> |
| Author | Yotam Drier |
| License | Artistic-1.0 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Network, Software |
| Package Short Url | https://bioconductor.org/packages/pathifier/ |
Citation
From within R, enter citation("pathifier"):
Yotam Drier. pathifier: Quantify deregulation of pathways in cancer. doi:10.18129/B9.bioc.pathifier, R package version 1.50.0, https://bioconductor.org/packages/pathifier.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | pathifier_1.50.0.tar.gz |
| Windows binary (x86_64) | pathifier_1.50.0.zip |
| macOS binary (arm64) | pathifier_1.50.0.tgz |
| macOS binary (x86_64) | pathifier_1.50.0.tgz |
Dependencies
Imports: R.oo, princurve (>= 2.0.4)
Reverse dependencies
Imports Me (1): funOmics